MCScanx: Multiple Collinearity Scan toolkit

Input files
at_vv.gff; at_vv.blast
Command

In MCScanX package directory, type

./MCScanX data/at_vv

Output files
at_vv.collinearity; at_vv.tandem
Multiple alignments

Arabidopsis: Chr1, Chr2, Chr3, Chr4 and Chr5

Vitis vinifera: Chr1, Chr2, Chr3, Chr4, Chr5, Chr6, Chr7, Chr8, Chr9, Chr10, Chr11, Chr12, Chr13, Chr14, Chr15, Chr16, Chr17, Chr18 and Chr19

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Yupeng Wang | Plant Genome Mapping Laboratory | University of Georgia